Using the Primer Database to store your lab’s collection of primers

MacVector’s Primer Database allows you to save and retrieve primers from a Primer Database with the Primer3 and Quicktest Primer tools. You can also scan sequences for potential primer binding sites using Primer Database Search. The tool comes with a starter database of primers, but you can use existing subsequence files or import primers from Excel.

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To save a primer from QT Primer:

  • Open ANALYZE > QUICKTEST PRIMER (INDIVIDUAL)
  • Design your primer
  • Click ADD TO…
  • Give the primer a name and add a comment. Click OK
  • To save a primer from Primer Design:

  • Open ANALYZE > PRIMER DESIGN/TEST (PAIRS)
  • Design your primer pair
  • In the spreadsheet right click on a primer
  • Choose ADD PRIMER TO DATABASE
  • Give the primer a name and add a comment. Click OK
  • To use the Primer Database Search:

  • Open your sequence
  • Select ANALYZE > PRIMER DATABASE SEARCH
  • Choose parameters and click OK
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