You can very quickly annotate a region of interest in your sequence in the Editor tab. For example showing introns in lower case or highlighting CDS features with a colored background.
To enter sequences as mixed case.
Enable Edit | Transformations | Enable Mixed Case Entry
Type your sequence using SHIFT or CAPS LOCK
To color a region.
Select the region you want to highlight.
Choose Edit | Transformations | Color.
To change the case of a region.
Select the region you want to change to lower case
Choose Edit | Transformations | Make Lower Case.
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