There’s a new tool in MacVector 15 that allows you to do functional domain analysis on your protein sequence using the InterProScan service. InterPro contains multiple databases of protein families, domains and motifs and InterProScan will submit a protein sequence to a search of these databases. It will also do extra analysis such as transmembrane region analysis using TMHMM and other tools. For MacVector 15 you can submit your protein sequence to an InterProScan search and also annotate results directly back to your sequence.
Functional domain analysis of protein sequences using InterProScan
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