Velvet is a short read aligner that works very well on a wide variety of reads. Velvet excels at de novo assembly of sequencing reads from second and newer generation sequencers. In our latest release, MacVector 13, we’ve added Velvet to Assembler. This joins the existing tools, Phrap for Sanger sequencing reads and Bowtie for […]
There’s a public beta of our imminent release MacVector 13 ready for downloading and testing on our website. You just need an active license for MacVector 12.7 to run this. Watch out for the new easier way of installation (no installer, just drag to your Applications folder!). As well as a redesign of the interface […]
I blogged about this a few years ago, but its something that still comes up on a regular basis. The blog link discusses the 6 main alignment algorithms in MacVector and how to decide which is the most appropriate for accomplishing different tasks. One common request we get is “I want to see my chromatograms/traces […]
This is part of a series of posts about the shortly to be released MacVector 12.5. With each release of MacVector as well as adding new features we continually redesign and rewrite many existing parts of MacVector. This is done for a number of reasons. For example: to accommodate changes in OS X, where generally […]
This is part of a series of posts about and leading up to the release of MacVector 12.5. With Assembler 12.5 our developers have come up with an affordable and straightforward solution for assembling and visualizing your NGS data. Generating sequencing data is cheaper than it has ever been, however, with this increase in data […]
Our latest version, MacVector 12.5, will be released on the 1st of December, 2011. There’s some great new features in this release with the addition of extra alignment algorithms, Muscle and T-coffee, to the Multiple Sequence Alignment analysis interface, as well as many interface enhancements and performance improvements. However, the most important new feature in […]
This is part of a series of posts about and leading up to the release of MacVector 12.5. Assembler has always made it easy to assemble your sequencing projects. It hides the complicated algorithms and provides a point and click interface to show you the results. With the release of MacVector 12.5 the range of […]
We recently changed the way that Assembler network licenses are shared out to make it easier for many users to share a single license. Previously an Assembler license was checked out whenever you loaded MacVector with Assembler. However, now an Assembler license is only checked out when you start a new assembly project or open […]
Update 19 August 2013: We’ve added support for Muscle and T-Coffee to the MSA editor We get a lot of comments and questions from users on the various alignment functions in MacVector. They say there’s more than one way to skin a cat (not that I’ve done that – I have skinned a catfish, but […]