Velvet is a short read aligner that works very well on a wide variety of reads. Velvet excels at de novo assembly of sequencing reads from second and newer generation sequencers. In our latest release, MacVector 13, we’ve added Velvet to Assembler. This joins the existing tools, Phrap for Sanger sequencing reads and Bowtie for…
Calculating an accurate melting temperature of your oligos, your template and of the predicted product is important to set the cycling parameters of your PCR machine. The Tm calculations in MacVector were updated in MacVector 12.6 to use a more modern algorithm. MacVector has always used thermodynamic “nearest neighbor” calculations, but there were two changes…
MacVector generally just works. However, even the most well behaved of applications sometime have problems. If you have restarted the application and restarted your Mac then a good troubleshooting step to perform next is to reset your preferences. For Mountain Lion and earlier deleting the preferences meant opening up Finder, navigating to your ~/Library folder…
There’s a few different ways to import annotation from the ENSEMBL database browser, as well as other databases. Using Genbank The easiest way to export from ENSEMBL and keep all annotation is to use the Genbank format. The default format will be FASTA which has no annotation. With Genbank all the annotation is stored in…
When you’ve got a lot of licenses and a lot of computers to manage, a network license is the most effective way of letting your users access their favourite sequence analysis app for the Mac! MacVector network license use the KeyServer network license software from Sassafras. However, in addition to the KeyServer setup MacVector also…
New to MacVector 13 is the ability to quickly test a pair of primers. Previously to test a pair of primers with the Primer3 tool you needed to modify the expected product and reduce the stringency of all parameters so that your primers would be accepted. Now when you enter a pair of primers into…
Before MacVector 13 all the results windows could sometimes get in the way. Some tools, such as the restriction enzyme tool, can generate up to six different results windows. Such as a list of all enzymes that cut a sequence, a list of all non-cutters, a restriction map, etc.. This is all useful information and…
There’s a public beta of our imminent release MacVector 13 ready for downloading and testing on our website. You just need an active license for MacVector 12.7 to run this. Watch out for the new easier way of installation (no installer, just drag to your Applications folder!). As well as a redesign of the interface…
The next version of MacVector is almost ready to be released. MacVector 13 is more powerful and intuitive than ever. There’s not only some very useful new tools and features but MacVector 13 has had a redesign. A fresh new interface MacVector 13 looks great. The interface is now muted to suit the look and…
Up to MacVector 13 MacVector has had limited Applescript support. The current release (12.7.5) is able to open sequences, print them and that’s about it! We’ve had frequent requests for MacVector to batch process files. So with the new release (coming very soon) you can batch process files. No analysis can be undertaken just yet…
